How Can I Tell if My Gut Is Unhealthy?

Patient in hospital bed

Your gut health plays a central role in nearly every aspect of your overall well-being. From digestion and immune function to mental clarity and skin health, the gut is often referred to as the body’s “second brain” – and for good reason. When your digestive system isn’t functioning properly, it can lead to a range of problems. Some of the most common signs of an unhealthy gut include bloating, constipation, diarrhoea, unexplained fatigue, frequent illness, poor concentration, and skin conditions like acne or eczema. You might also notice increased food intolerances or changes in your mood, such as anxiety or low mood. These seemingly unrelated symptoms can often be traced back to underlying digestive issues.

Addressing gut health early can improve nutrient absorption, reduce inflammation, and enhance your energy levels and immune resilience. If you’re experiencing persistent symptoms, it may be time to speak with a gut health specialist.

Consult a specialist to get personalised advice on your gut health.

What Is Gut Health and Why Does It Matter?

If you’ve ever asked yourself, what is gut health, the answer goes far beyond just digestion. Gut health refers to the balance and proper functioning of the entire digestive system – particularly the gut microbiome, a vast community of trillions of bacteria, viruses, and fungi living in your intestines. These microorganisms play a vital role in breaking down food, absorbing nutrients, and supporting immune function.

A healthy gut microbiome also helps regulate hormones and neurotransmitters, including serotonin – often called the “feel-good” chemical – which explains why gut health can significantly affect your mood and mental clarity. When your gut bacteria are out of balance, it can lead to issues like inflammation, poor digestion, weakened immunity, and increased stress levels.

Emerging research continues to link poor gut health with a range of chronic conditions, including type 2 diabetes, irritable bowel syndrome (IBS), heart disease, and even certain autoimmune disorders. Maintaining a balanced gut is not just about avoiding stomach aches — it’s essential for long-term health and resilience.

Understanding and caring for your gut microbiome is one of the most powerful ways to support your entire body from the inside out.

Signs of an Unhealthy Gut

Many people live with digestive symptoms for years without realising they may point to deeper health issues. Understanding the early signs of poor gut health is essential for identifying and addressing problems before they escalate. While occasional discomfort is normal, persistent symptoms could indicate an imbalance in your digestive system that requires attention.

One of the most common symptoms of bad gut health is bloating, often caused by excess gas or poor digestion. You may also experience irregular bowel movements, including constipation, diarrhoea, or unpredictable patterns that affect your day-to-day comfort. Other physical symptoms include fatigue, especially after meals, and frequent cravings for sugar or processed foods — both of which can be influenced by gut bacteria imbalances.

Surprisingly, your skin can also reflect what’s happening in your gut. Conditions like acne, eczema, or unexplained rashes may be linked to inflammation and poor nutrient absorption. Additionally, a struggling gut can impact your immune system, leading to more frequent colds or infections.

These signs of poor gut health are your body’s way of signalling that something isn’t right internally. If left unaddressed, they can lead to chronic issues that are harder to reverse over time.

It’s important not to ignore these early red flags. By taking a proactive approach, you can restore balance, reduce inflammation, and support overall well-being.

Consult a specialist to get personalised advice on your gut health.

How to Improve Gut Health Naturally

If you’re wondering how to improve gut health naturally, the good news is that small daily habits can make a big difference. Supporting your digestive system doesn’t always require medication — in many cases, natural lifestyle and dietary changes can help restore balance and reduce inflammation.

One of the most effective ways to improve gut health is through diet. Foods good for gut health include probiotic-rich options like yoghurt, kefir, sauerkraut, kimchi, and miso, which introduce beneficial bacteria into your gut microbiome. Pairing these with prebiotic foods — such as garlic, onions, leeks, asparagus, and bananas — helps feed and maintain those healthy bacteria. A diet high in fibre, especially from vegetables, legumes, and whole grains, supports regular bowel movements and overall digestive function.

Staying hydrated is equally important, as water aids in the breakdown and absorption of nutrients and helps prevent constipation. Getting enough sleep gives your body time to repair and balance your gut microbiota, while stress reduction techniques like meditation, regular exercise, and deep breathing can help calm the gut-brain axis.

Other natural remedies include herbal teas like peppermint or ginger, which can soothe the digestive tract and reduce bloating. Reducing sugar and processed foods also limits harmful bacteria growth and inflammation.

Learning how to improve gut health naturally is about creating sustainable, long-term habits that benefit both your body and mind. By nourishing your microbiome, you’ll support better digestion, immunity, and overall health from within.

What Naturally Kills Bad Bacteria in the Gut?

An imbalanced gut can allow harmful bacteria to thrive, leading to a range of digestive and inflammatory issues. Fortunately, there are several effective, natural ways to support a healthier microbiome. If you’re looking for what naturally kills bad bacteria in the gut, start with your diet and daily habits.

Garlic is a powerful natural antimicrobial that helps eliminate harmful bacteria without disturbing beneficial strains. Ginger supports digestion, reduces inflammation, and helps create an environment where good bacteria can flourish. Probiotics, whether from supplements or fermented foods like yoghurt, kefir, and sauerkraut, also play a vital role in crowding out bad bacteria and restoring balance.

In addition to adding gut-friendly foods, it’s equally important to cut back on what harms your microbiome. Excessive sugar and processed foods feed harmful bacteria and yeasts, allowing them to multiply. By reducing these and focusing on a whole-food diet rich in fibre and nutrients, you create a more hospitable environment for good bacteria.

Knowing what naturally kills bad bacteria in the gut empowers you to take control of your digestive health — starting with simple, everyday choices that make a lasting difference.

7 Worst Foods for Gut Health

What you eat has a profound impact on your gut microbiome — and certain foods can do more harm than good. Here are the 7 worst foods for gut health, along with healthier alternatives to help support digestion and microbiome balance.

  1. Refined Sugar – One of the absolute worst foods for gut health, sugar feeds harmful bacteria and yeasts, increasing inflammation and digestive issues. Swap for: fresh fruit or raw honey in moderation.
  2. Artificial Sweeteners – Found in diet drinks and low-calorie snacks, sweeteners like aspartame and sucralose can negatively alter gut bacteria. Swap for: natural alternatives like stevia or monk fruit.
  3. Fried Foods – High in unhealthy fats, fried items are hard to digest and can lead to inflammation and sluggish digestion. Swap for: air-fried or grilled options using olive oil.
  4. Processed Meats – These often contain nitrates, additives, and high levels of salt, which disrupt the gut microbiome. Swap for: lean, unprocessed proteins like chicken, turkey, or plant-based alternatives.
  5. Alcohol – Excessive drinking can weaken the gut lining and disrupt the balance of good bacteria. Swap for: kombucha, herbal teas, or sparkling water with lemon.
  6. White Bread and Pasta – These refined carbs lack fibre and feed bad bacteria. Swap for: wholegrain or legume-based options.
  7. Dairy (in sensitive individuals) – For those with lactose intolerance or sensitivity, dairy can cause bloating and discomfort. Swap for: lactose-free or plant-based milk like almond or oat.

Avoiding the 7 worst foods for gut health and making simple swaps can go a long way in restoring balance and supporting long-term digestive wellness.

How to Fix an Unhealthy Gut

If you’re dealing with persistent digestive symptoms, fatigue, or skin issues, it’s time to take steps to fix an unhealthy gut. Repairing your gut involves a combination of targeted lifestyle changes, specific foods, and sometimes professional guidance to get to the root of the problem.

The foundation of healing starts with diet. Reducing sugar, processed foods, and artificial additives is essential, as these feed bad bacteria and promote inflammation. Instead, focus on high-fibre foods, fermented products, and whole, nutrient-dense meals. Gut health supplements like probiotics and prebiotics can also support the restoration of a healthy microbiome by reintroducing beneficial bacteria and feeding them with the right nutrients.

In some cases, natural antimicrobials like garlic or oregano oil may be helpful, but they should be used under professional supervision. Rest, sleep, hydration, and regular physical activity all contribute to creating a stable environment for your gut to recover.

For the most effective results, it’s wise to consult with a specialist. A gut health expert can assess your symptoms, perform appropriate testing, and create a tailored plan that addresses the root cause — not just the symptoms.

Consult a specialist to start your journey to better gut health today!

Signs Your Gut Is Healing

Once you begin making positive changes to your diet and lifestyle, you may start to notice encouraging signs your gut is healing. These improvements often appear gradually but are clear indicators that your gut microbiome is becoming more balanced and resilient.

One of the first things people notice is improved digestion — less bloating, more regular bowel movements, and reduced discomfort after meals. As your gut begins to function more efficiently, you’ll likely experience increased energy levels, better concentration, and even improved mood, thanks to the gut’s close connection with brain chemistry.

Clearer skin is another common indicator. Because inflammation in the gut often affects the skin, healing internally can lead to visible improvements in conditions like acne or eczema. You might also notice a stronger immune response, with fewer colds or infections, and a reduction in sugar cravings as your body becomes less dependent on unhealthy gut bacteria.

These signs your gut is healing reflect a shift toward microbial diversity and reduced inflammation. With consistency and the right support, your gut can continue to strengthen — improving not only digestion but your overall physical and mental well-being.

What Is Bad Bacteria in the Gut Called?

The bad bacteria in the gut are often referred to as pathogenic or harmful microbes — organisms that disrupt the natural balance of your microbiome and contribute to disease. One well-known example is Clostridium difficile (or C. diff), a bacterium that can cause severe diarrhoea, inflammation, and life-threatening colitis, particularly after antibiotic use.

Other harmful bacteria include strains of Escherichia coli (E. coli) and Salmonella, which can lead to food poisoning and intestinal damage. When these bad bacteria in the gut multiply unchecked, they crowd out beneficial microbes, weaken the gut lining, and trigger inflammation.

Maintaining a healthy gut isn’t about eliminating all bacteria — it’s about achieving the right balance. A diverse microbiome, rich in good bacteria, helps keep harmful strains under control and supports digestion, immunity, and mental health. The key is prevention through diet, lifestyle, and, when needed, professional support.

Frequently Asked Questions (FAQs)

How to improve gut health naturally?


To improve gut health naturally, focus on a diet rich in fibre, probiotics, and fermented foods. Drink plenty of water, prioritise sleep, and manage stress. Reducing sugar and processed foods also supports gut balance. Simple lifestyle changes can have a powerful, long-lasting effect on your digestive system.

What naturally kills bad bacteria in the gut?


Garlic, ginger, and probiotics are key natural remedies that naturally kill bad bacteria in the gut. These support beneficial microbes while reducing harmful strains. Avoiding sugar and processed foods is essential, as they promote the growth of pathogenic bacteria and disrupt microbiome balance.

How to starve bad gut bacteria?


To starve bad gut bacteria, cut out refined sugars, artificial sweeteners, and processed foods. These feed harmful microbes. Instead, increase fibre intake, try intermittent fasting, and eat whole foods that support good bacteria. This approach creates an environment where bad bacteria can’t thrive.

How to fix an unhealthy gut?


To fix an unhealthy gut, start by eliminating inflammatory foods and incorporating probiotics, prebiotics, and fibre-rich meals. Add gut health supplements when needed, and prioritise sleep, hydration, and stress management. For best results, consult a gut health specialist for a personalised plan.

What are the 7 worst foods for gut health?


The 7 worst foods for gut health include refined sugar, fried foods, artificial sweeteners, processed meats, alcohol, white bread, and dairy (in sensitive individuals). These promote inflammation and disrupt the microbiome. Replace them with gut-friendly alternatives like whole grains, lean proteins, and fermented foods.

What is bad bacteria in the gut called?


Common bad bacteria in the gut include Clostridium difficile (C. diff), Salmonella, and some strains of E. coli. These harmful microbes can cause inflammation, infections, and digestive problems. A balanced microbiome with beneficial bacteria is key to keeping these pathogens in check.

What are the signs your gut is healing?


Signs your gut is healing include reduced bloating, regular bowel movements, clearer skin, improved mood, and higher energy levels. Fewer food cravings and stronger immunity are also good indicators. These changes reflect improved microbiome balance and reduced inflammation in your digestive system.

What are 10 signs of an unhealthy gut?


Here are 10 signs of an unhealthy gut: bloating, gas, constipation, diarrhoea, fatigue, sugar cravings, frequent illness, brain fog, skin issues, and mood changes. These symptoms suggest microbial imbalance and should not be ignored, as they may indicate deeper digestive or inflammatory problems.

FIND A SPECIALIST

Find a specialist for your gut problem.

The Gut Clinic UK is a one of largest physician-led platform renowned for its exceptional Gut specialists in the United Kingdom. We take pride in our rigorous selection process for specialists, ensuring that only the most qualified and experienced professionals join our platform.

Our specialists actively engage with patients, providing them with clear explanations, answering their questions, and involving them in the decision-making process.